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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5029757_5030613_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5029757 - 5030613
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATAAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTATCTCCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
TTTTACTGGACA
Flanking Amino Acid:
CKEEGLDIDVRLLIAINRRG
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.8
85.6
24.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
70.5
0.46
0.9
62
39.6
Minor 5ss
34.4
-1.8
2.8
41.8
44.8
Minor BPS
66.1
0.5
1.7
80.71
34.2

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168