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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5030696_5031256_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5030696 - 5031256
Intron Length:
561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGTCT
5'SS Class:
major
3'SS Sequence:
CATGTGTTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTCAA
U12 Branch Point Sequence:
TTGATTCCAAAT
Flanking Amino Acid:
RSTPREEKSTGMTKRMYVET
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.52
1.1
66.6
39.6
Major BPS
74.2
0.6
0.9
75.7
28
Major PPT
71.9
0.49
0.9
65.5
40.7
Minor 5ss
37.7
-1.4
3.6
56.7
47.5
Minor BPS
43.8
-0.3
1.9
62.56
41.4

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168