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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5031345_5032111_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5031345 - 5032111
Intron Length:
767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
GTTTCTTACTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TGTTTCTTACTC
Flanking Amino Acid:
ITTRAEDILLITKDVIKEFA
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
72.9
34.4
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
78.7
0.65
0.9
77.5
35.9
Minor 5ss
43.3
-0.7
2.9
52.2
46
Minor BPS
66.4
0.49
1.6
74.33
36.8

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168