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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5032173_5032605_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5032173 - 5032605
Intron Length:
433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGAGTAGA
5'SS Class:
major
3'SS Sequence:
CTTTTTATTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATTTTTTAACT
Flanking Amino Acid:
IDKGKKRTLDECFQMFQIIY
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1
67.8
39.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
86.4
0.82
0.7
85.8
27.2
Minor 5ss
30.9
-2.2
2.6
29.8
36.6
Minor BPS
83.8
1.14
0.9
92.59
29.1

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168