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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5032737_5033688_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5032737 - 5033688
Intron Length:
952

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGCGCC
5'SS Class:
major
3'SS Sequence:
ATTTCCCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTAAAAGAAACA
Flanking Amino Acid:
LRFYRELPKVELHAHLNGCI
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.1
0.62
1
62
37
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.1
0.59
0.8
67
34.7
Minor 5ss
32.3
-2
3.3
39.1
40.7
Minor BPS
38.6
-0.8
2.4
55.35
42.8

Associated Gene:

Gene:
ADAL
Ensembl Gene ID:
ENSAPLG00000009775
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010210
5026587 - 5033754
7168