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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5034845_5036022_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5034845 - 5036022
Intron Length:
1178

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAAAG
5'SS Class:
major
3'SS Sequence:
TTCATTCCTATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
AAATCATTAAAC
Flanking Amino Acid:
GYKWSTALALSITLGGFGAD
Intron Amino Acid Position:
368

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.53
1.1
65.1
40.7
Major BPS
100
1.24
0.5
100
0
Major PPT
78.5
0.64
0.8
73.3
31.7
Minor 5ss
31.1
-2.2
3.2
39.5
46
Minor BPS
58.8
0.26
1.7
66.29
37.9

Associated Gene:

Gene:
TM2D3
Ensembl Gene ID:
ENSAPLG00000009696
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010098
5034679 - 5039511
4833