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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5036844_5037426_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5036844 - 5037426
Intron Length:
583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTAAC
5'SS Class:
major
3'SS Sequence:
TGTCCTTCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
GTATTATTAATG
Flanking Amino Acid:
CKVKPHVHCVDQNNHEQENF
Intron Amino Acid Position:
285

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
1
76.1
32.7
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
78.5
0.64
0.8
73.7
31.3
Minor 5ss
38.6
-1.3
2.8
51.7
39.2
Minor BPS
58.3
0.12
1.7
61.97
39.9

Associated Gene:

Gene:
TM2D3
Ensembl Gene ID:
ENSAPLG00000009696
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010098
5034679 - 5039511
4833