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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5038478_5038916_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5038478 - 5038916
Intron Length:
439

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGCCTG
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TCATTCTAAAAA
Flanking Amino Acid:
VAQLYGLAGRAGSLMTTKHS
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.58
1
60
46.2
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.5
-1.5
3.2
48.4
47.2
Minor BPS
54.8
0.15
1.8
64.76
41.6

Associated Gene:

Gene:
TM2D3
Ensembl Gene ID:
ENSAPLG00000009696
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010098
5034679 - 5039511
4833