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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5041462_5042189_R

Intron Information:

Intron Rank:
13
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5041462 - 5042189
Intron Length:
728

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAGTA
5'SS Class:
strong_major
3'SS Sequence:
GGTGTGCAGTGAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTTTTTTAGGT
Flanking Amino Acid:
GPTSEEYAQQFFEAGFMSDV
Intron Amino Acid Position:
548

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.2
0.9
0.8
80.3
26.9
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
43.1
-0.4
1.7
43.6
46.9
Minor 5ss
28.6
-2.5
3.4
37.8
47
Minor BPS
61.6
0.44
1.8
82.89
39

Associated Gene:

Gene:
TARS3
Ensembl Gene ID:
ENSAPLG00000008485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008893
5041087 - 5051885
10799