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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5046511_5048524_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5046511 - 5048524
Intron Length:
2014

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAAAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTGATATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTTTTGATA
Flanking Amino Acid:
GFYYDMYIEDRCGPLIDLCR
Intron Amino Acid Position:
38

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
0.9
83.1
28.4
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
75.5
0.57
0.9
70.4
39.5
Minor 5ss
34.5
-1.8
3.1
48.5
47.2
Minor BPS
69.8
0.62
1
75.26
29.2

Associated Gene:

Gene:
TARS3
Ensembl Gene ID:
ENSAPLG00000008485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023671
5041087 - 5048637
7551