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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5048647_5049788_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5048647 - 5049788
Intron Length:
1142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTACGTAAA
5'SS Class:
major
3'SS Sequence:
ATTTTATTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
CTGATTTTATTT
Flanking Amino Acid:
LMFDNEEAQAVYWHSSAHIL
Intron Amino Acid Position:
177

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.9
0.4
1.2
67.7
39.1
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
87.3
0.84
0.8
82
34
Minor 5ss
36.9
-1.5
3
51.4
45.2
Minor BPS
49.2
0.02
1.6
63.14
42.3

Associated Gene:

Gene:
TARS3
Ensembl Gene ID:
ENSAPLG00000008485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008893
5041087 - 5051885
10799