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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5049913_5050244_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5049913 - 5050244
Intron Length:
332

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCC
5'SS Class:
strong_major
3'SS Sequence:
TTGTGTTCCTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTGAA
U12 Branch Point Sequence:
TTGTCCTCATTT
Flanking Amino Acid:
TTPYQLAVGISQGLASNAVI
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
35
Major BPS
78.4
0.71
0.9
69.4
37.7
Major PPT
75
0.56
0.8
73.8
36.8
Minor 5ss
47
-0.3
2.5
62.8
41.8
Minor BPS
61.3
0.43
1.8
80.1
42.3

Associated Gene:

Gene:
TARS3
Ensembl Gene ID:
ENSAPLG00000008485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008893
5041087 - 5051885
10799