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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5050411_5051647_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5050411 - 5051647
Intron Length:
1237

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CTG|GCGGCGAGG
5'SS Class:
weak_major
3'SS Sequence:
CCAAGCTTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAC
U12 Branch Point Sequence:
TTTGTTATAACT
Flanking Amino Acid:
ARAAPAEPPAEDRLKLYEAL
Intron Amino Acid Position:
80

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.7
0.09
1.2
47.8
40.9
Major BPS
77.9
0.69
1
78.3
31.3
Major PPT
60.3
0.23
0.9
52.8
36.4
Minor 5ss
20.2
-3.4
3.9
26.9
39
Minor BPS
63.6
0.5
1.7
83.99
37.1

Associated Gene:

Gene:
TARS3
Ensembl Gene ID:
ENSAPLG00000008485
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008893
5041087 - 5051885
10799