About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5202879_5208551_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5202879 - 5208551
Intron Length:
5673

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TGTTAAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TCTTGTTAAATT
Flanking Amino Acid:
WEQHTVTLHRAPGFGFGIAI
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
71.1
37.5
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
70.7
0.47
1
63.4
41.7
Minor 5ss
42.7
-0.8
2.9
47.1
48.3
Minor BPS
53.2
0.18
2.1
74.65
43.4

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042597
5201255 - 5220040
18786