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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5207431_5208551_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
5207431 - 5208551
Intron Length:
1121

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTTTTTCTG
5'SS Class:
weak_major
3'SS Sequence:
TGTTAAATTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATAAAT
U12 Branch Point Sequence:
TCTTGTTAAATT
Flanking Amino Acid:
FTACRLNLDHAPGFGFGIAI
Intron Amino Acid Position:
15

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
52.1
0.05
1.3
52.3
44
Major BPS
74.5
0.61
1
79.6
29.1
Major PPT
70.7
0.47
1
63.4
41.7
Minor 5ss
42.8
-0.8
2.7
56
41.3
Minor BPS
53.2
0.18
2.1
74.65
43.4

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825