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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5208991_5212943_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5208991 - 5212943
Intron Length:
3953

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TGTTTGGTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTGAT
U12 Branch Point Sequence:
TGATACTGATGT
Flanking Amino Acid:
LRKSGKNAKITIRRMKKIQI
Intron Amino Acid Position:
60

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
72.4
32.2
Major BPS
83.5
0.83
0.8
71.6
36.4
Major PPT
75.1
0.56
1
69.5
41.6
Minor 5ss
34.6
-1.8
3.3
45.9
43.7
Minor BPS
44.6
-0.3
2.1
63.92
45.4

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611
ENSAPLT00000042597
5201255 - 5220040
18786