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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5213224_5213827_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5213224 - 5213827

Intron Length:

604

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAACTTCT

5'SS Class:

strong_major

3'SS Sequence:

TAATTATATGAAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TTTTCTTTAATT

Flanking Amino Acid:

VTLVKSRKNEEYGLRLASHI

Intron Amino Acid Position:

153

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

83.7

0.79

1.1

81.4

33.4

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

61.5

0.26

1.2

42.5

Minor 5ss

48.4

-0.1

2.5

68.6

42.1

Minor BPS

90.6

1.35

0.7

99.65

21.1

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611

ENSAPLT00000042597

5201255 - 5220040

18786