About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5213932_5214686_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5213932 - 5214686
Intron Length:
755

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTTACTGTTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TTTTCAGTAAGT
Flanking Amino Acid:
NIQEGDVVLKINGTVTENMS
Intron Amino Acid Position:
188

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
78.8
0.65
0.9
72.6
37.4
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
53.6
0.19
2.5
84.99
41.5

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611
ENSAPLT00000042597
5201255 - 5220040
18786