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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5214856_5215204_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5214856 - 5215204
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTAACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTATTTAACA
Flanking Amino Acid:
IHSANASERDDISEIQSLAS
Intron Amino Acid Position:
244

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
83.5
29.8
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
84.6
0.78
0.9
81.3
34.8
Minor 5ss
34.3
-1.8
2.8
43.1
43.9
Minor BPS
80.2
0.94
1.3
88.36
28.3

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042597
5201255 - 5220040
18786
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611