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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5215350_5219976_F

Intron Information:

Intron Rank:
8
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
5215350 - 5219976
Intron Length:
4627

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGCA
5'SS Class:
major
3'SS Sequence:
CAATAATGAAGAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TATATCTGAAAA
Flanking Amino Acid:
RHSPQQPSNGRLLHIRPLSL
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.7
34.9
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
42.9
-0.4
1.7
39.8
42.2
Minor 5ss
24.1
-3
3.2
30.2
42.9
Minor BPS
56.6
0.2
1.6
67.76
37.6

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042597
5201255 - 5220040
18786