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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5215350_5221707_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5215350 - 5221707
Intron Length:
6358

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGATGGCA
5'SS Class:
major
3'SS Sequence:
TTTTCTAATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTTTTCTAATA
Flanking Amino Acid:
RHSPQQPSNGSLRSREDERT
Intron Amino Acid Position:
292

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
64.7
34.9
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78.6
0.64
0.9
74.6
34
Minor 5ss
24.1
-3
3.2
30.2
42.9
Minor BPS
66.6
0.52
1.6
79.19
30.8

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611