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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5221845_5224287_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5221845 - 5224287
Intron Length:
2443

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAATG
5'SS Class:
strong_major
3'SS Sequence:
TATATTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAT
U12 Branch Point Sequence:
TATATTTTAATA
Flanking Amino Acid:
RTEKQTPPLPEPKPVYAQGG
Intron Amino Acid Position:
338

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
77.9
36.7
Major BPS
82.3
0.8
0.9
87.6
25.7
Major PPT
73.7
0.53
0.9
70.3
39.7
Minor 5ss
36.4
-1.5
3.1
48.5
47.2
Minor BPS
68.5
0.58
1.2
72.59
33.2

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611