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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5224394_5225246_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5224394 - 5225246

Intron Length:

853

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTAATGTAA

5'SS Class:

major

3'SS Sequence:

TCTAAATCTCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ATACCTCTAACT

Flanking Amino Acid:

PNSTHEDGMLRPSMKLVKFR

Intron Amino Acid Position:

373

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

71.2

0.5

1.1

65.1

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

0.43

0.9

59.4

41.6

Minor 5ss

36.6

-1.5

3.3

47.2

48.3

Minor BPS

61.2

0.43

1.7

77.93

37.7

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611