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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5226048_5226412_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5226048 - 5226412

Intron Length:

365

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAAGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTTCTAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATTTGTTTAACA

Flanking Amino Acid:

IIREEAKKKDVYRRIVESDV

Intron Amino Acid Position:

442

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

90.2

0.95

0.8

86.2

29.2

Major BPS

96.5

1.15

0.6

34.2

Major PPT

77.5

0.62

82.9

32.3

Minor 5ss

38.5

-1.3

2.8

49.8

40.3

Minor BPS

71.8

0.68

1.7

81.43

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611