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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5226633_5227094_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5226633 - 5227094

Intron Length:

462

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTACGATCT

5'SS Class:

strong_major

3'SS Sequence:

GTTGTCATCTTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTGTCAT

U12 Branch Point Sequence:

TTTTTGGTAACT

Flanking Amino Acid:

VERGIIPNKNRAEQLASVQY

Intron Amino Acid Position:

515

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.6

0.77

75.3

35.4

Major BPS

84.8

0.86

1.1

85.7

34.9

Major PPT

69.9

0.45

0.9

67.1

39.1

Minor 5ss

39.5

-1.2

3.3

57.4

46.7

Minor BPS

55.2

0.24

2.6

86.99

39.2

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611