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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5227280_5227422_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5227280 - 5227422

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTACGGCTT

5'SS Class:

strong_major

3'SS Sequence:

CCTTCTATTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACTTAAC

U12 Branch Point Sequence:

TTCTCCTTTACC

Flanking Amino Acid:

PAYERVVLREAGFLRPVTIF

Intron Amino Acid Position:

577

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.2

0.74

73.6

Major BPS

68.3

0.45

69.6

32.8

Major PPT

77.6

0.62

0.8

69.9

35.2

Minor 5ss

35.6

-1.6

3.7

55.9

48.3

Minor BPS

76.3

0.81

1.6

82.91

37.2

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611