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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5227519_5227943_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5227519 - 5227943
Intron Length:
425

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTGTG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCTACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TCCTCTCTACCA
Flanking Amino Acid:
REEPDIFQIAKSEPRDAGTD
Intron Amino Acid Position:
609

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
0.9
79
35.3
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
76.3
0.59
0.9
69.9
35.3
Minor 5ss
38
-1.4
3.3
49.5
41.1
Minor BPS
49.4
-0
2
63.12
43.7

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611