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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5228027_5229065_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5228027 - 5229065

Intron Length:

1039

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AGA|GTAAGTCTT

5'SS Class:

major

3'SS Sequence:

TTTATCATAACAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

TTTATCATAACA

Flanking Amino Acid:

LHTIKQIIDRDKHALLDVTP

Intron Amino Acid Position:

637

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

77.4

0.65

75.5

40.6

Major BPS

96.5

1.15

0.6

34.2

Major PPT

75.8

0.58

71.1

38.3

Minor 5ss

41.4

-1

3.1

55.9

42.3

Minor BPS

68.1

0.56

1.6

81.01

33.9

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611