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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5229277_5230270_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5229277 - 5230270

Intron Length:

994

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTAAT

5'SS Class:

strong_major

3'SS Sequence:

GCTCTACTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCAAAT

U12 Branch Point Sequence:

AAATGTCTAACT

Flanking Amino Acid:

LRKNNHHLFTTTINLNSMNE

Intron Amino Acid Position:

707

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

88.6

0.91

0.8

89.8

22.2

Major BPS

68.5

0.46

73.3

28.9

Major PPT

71.9

0.49

0.9

62.6

38.7

Minor 5ss

39.1

-1.2

2.8

51.7

39.1

Minor BPS

49.1

0.01

69.29

41.3

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611