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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5230372_5231494_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5230372 - 5231494

Intron Length:

1123

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGAAAT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGTGATGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTAAT

U12 Branch Point Sequence:

TGCTCTTTAATT

Flanking Amino Acid:

NQLVWVSEGKADGATSDDLD

Intron Amino Acid Position:

741

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.9

1.03

0.7

89.8

22.3

Major BPS

87.2

0.92

0.9

87.6

25.6

Major PPT

78.6

0.64

73.7

40.9

Minor 5ss

35.1

-1.7

3.1

48.5

47.2

Minor BPS

77.9

0.95

1.1

84.22

37.1

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611