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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5231849_5232260_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5231849 - 5232260
Intron Length:
412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
AAACACTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
ATATTTTAAACA
Flanking Amino Acid:
SGFKTTASQPKAEASPAVPY
Intron Amino Acid Position:
859

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
62.6
0.29
1
54
40.1
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
60.7
0.33
1.6
69.76
36.7

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008293
5208603 - 5247213
38611