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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5231849_5233316_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5231849 - 5233316
Intron Length:
1468

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CTCTACTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTAATTTTAAAT
Flanking Amino Acid:
SGFKTTASQPVYRKDPYINE
Intron Amino Acid Position:
890

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
72
39.5
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
74
0.54
0.9
69.1
35.5
Minor 5ss
33.3
-1.9
2.9
41.4
44.7
Minor BPS
65
0.55
1.4
78.52
37.3

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825