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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5234214_5234537_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5234214 - 5234537

Intron Length:

324

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGTTGT

5'SS Class:

strong_major

3'SS Sequence:

CTTCTCTTTACAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAAATAT

U12 Branch Point Sequence:

TTCTCTTTACAG

Flanking Amino Acid:

KDPSDTSAVKPPELAPKPTL

Intron Amino Acid Position:

1242

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

96.5

1.1

0.7

87.9

29.3

Major BPS

50.9

0.02

1.1

47.4

35.7

Major PPT

88.8

0.87

0.7

83.3

25.1

Minor 5ss

41.9

-0.9

2.9

58.7

45.8

Minor BPS

56.8

0.07

1.8

63.96

44.2

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611