Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5234633_5235039_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5234633 - 5235039

Intron Length:

407

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAGATGCA

5'SS Class:

major

3'SS Sequence:

TCTTCCTCATTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTCAG

U12 Branch Point Sequence:

TCTTCCTCATTA

Flanking Amino Acid:

SHYEHDKTTYRAPEPQRPQV

Intron Amino Acid Position:

1273

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

76.2

0.62

68.4

36.8

Major BPS

60.8

0.27

1.6

71.4

45.1

Major PPT

74.9

0.56

0.8

75.1

28.6

Minor 5ss

30.9

-2.2

3.4

41.1

45.4

Minor BPS

59.2

0.29

1.8

71.35

41.4

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611