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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5235265_5239750_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5235265 - 5239750

Intron Length:

4486

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TAA|GTAAGTTTG

5'SS Class:

strong_major

3'SS Sequence:

TTTATTTCAACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

ATCATAT

U12 Branch Point Sequence:

TTTCCTTTATTT

Flanking Amino Acid:

QNQLNFSNYSKGKTTDAESM

Intron Amino Acid Position:

1348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

81.6

33.2

Major BPS

65.4

0.38

37.1

Major PPT

81.3

0.7

0.9

77.8

35.2

Minor 5ss

45.5

-0.5

2.8

58.6

40.2

Minor BPS

68.7

0.66

1.5

85.14

35.6

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611