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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5239931_5240579_F

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

5239931 - 5240579

Intron Length:

649

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TGA|GCAATGAGA

5'SS Class:

weak_major

3'SS Sequence:

CATTTTTGACAAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

TCATTTTTGACA

Flanking Amino Acid:

AHHKPALSEGDSGVFIFIAV

Intron Amino Acid Position:

1408

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

52.8

0.07

1.4

41.2

Major BPS

83.8

0.84

73.6

41.8

Major PPT

60.3

0.23

1.2

43.6

Minor 5ss

22.6

-3.2

3.8

27.1

37.5

Minor BPS

0.53

1.2

69.89

36.6

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611