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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5241048_5242475_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5241048 - 5242475

Intron Length:

1428

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TTTTATAATTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTATAAT

U12 Branch Point Sequence:

TGTTTTATAATT

Flanking Amino Acid:

VNAVPKAIPVSPSALEDEEE

Intron Amino Acid Position:

1564

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.97

0.8

82.3

32.2

Major BPS

87.8

0.94

0.9

86.6

28.1

Major PPT

80.9

0.7

0.9

79.1

38.1

Minor 5ss

48.4

-0.1

2.8

67.4

Minor BPS

64.2

0.52

1.5

80.97

34.8

Associated Gene:

Gene:

TJP1

Ensembl Gene ID:

ENSAPLG00000007911

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000020858

5207389 - 5247213

39825

ENSAPLT00000008293

5208603 - 5247213

38611