About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5243871_5247118_F

Intron Information:

Intron Rank:
26
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
5243871 - 5247118
Intron Length:
3248

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTATGCTGT
5'SS Class:
weak_major
3'SS Sequence:
TTTCCTCCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAA
U12 Branch Point Sequence:
AGATACTAAACA
Flanking Amino Acid:
FALKSSDSSSGDPKTWQNKS
Intron Amino Acid Position:
1685

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1.1
62.3
44.7
Major BPS
77.5
0.68
0.8
76.2
24.6
Major PPT
82
0.72
0.7
76.6
25.5
Minor 5ss
54.3
0.15
2.5
64.5
46.9
Minor BPS
54
0.12
1.9
64.87
40.8

Associated Gene:

Gene:
TJP1
Ensembl Gene ID:
ENSAPLG00000007911
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020858
5207389 - 5247213
39825
ENSAPLT00000008293
5208603 - 5247213
38611