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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5279252_5324470_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5279252 - 5324470

Intron Length:

45219

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TCG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTGTTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATAAAA

U12 Branch Point Sequence:

GCTGGGGTGACT

Flanking Amino Acid:

HSCPFWAGFSVLLSGLIGVV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.71

66.2

39.6

Major BPS

65.3

0.38

71.6

30.1

Major PPT

0.88

0.8

87.9

29.5

Minor 5ss

30.5

-2.2

2.8

37.9

39.5

Minor BPS

35.9

-1

2.8

54.87

47.4

Associated Gene:

Gene:

FAM189A1

Ensembl Gene ID:

ENSAPLG00000007880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008177

5279015 - 5415308

136294

ENSAPLT00000037065

5279015 - 5415308

136294

ENSAPLT00000025629

5279015 - 5415308

136294