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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5324528_5371658_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5324528 - 5371658
Intron Length:
47131

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
GTTTACTTATGC
Flanking Amino Acid:
VSWKRPLSLVIKFDSDGVCV
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
0.9
71.1
32.7
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
84.7
0.78
0.7
77.6
31.2
Minor 5ss
28.6
-2.4
3
32.8
35.9
Minor BPS
51.4
0.02
2.1
68.18
43

Associated Gene:

Gene:
FAM189A1
Ensembl Gene ID:
ENSAPLG00000007880
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025629
5279015 - 5415308
136294