Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5371791_5385705_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5371791 - 5385705

Intron Length:

13915

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGCGTTGC

5'SS Class:

strong_major

3'SS Sequence:

TGTCTTTTCACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TGTCTTTTCACA

Flanking Amino Acid:

ECNVVRLTLKDLLFSVCALN

Intron Amino Acid Position:

180

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.73

69.4

38.2

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

84.2

0.77

0.8

79.4

32.6

Minor 5ss

-1.8

43.8

Minor BPS

55.9

0.18

1.7

68.82

37.6

Associated Gene:

Gene:

FAM189A1

Ensembl Gene ID:

ENSAPLG00000007880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000037065

5279015 - 5415308

136294

ENSAPLT00000025629

5279015 - 5415308

136294

ENSAPLT00000008177

5279015 - 5415308

136294