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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5385814_5399792_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5385814 - 5399792
Intron Length:
13979

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TATTCATTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TTTGACCTATTC
Flanking Amino Acid:
QMVSSDLLQMFLPQRPHSAN
Intron Amino Acid Position:
216

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.8
79.6
35.4
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
84.8
0.78
0.8
81.9
34.4
Minor 5ss
34
-1.8
2.8
39.3
40.3
Minor BPS
46
-0.3
2.1
63.88
41.9

Associated Gene:

Gene:
FAM189A1
Ensembl Gene ID:
ENSAPLG00000007880
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037065
5279015 - 5415308
136294
ENSAPLT00000025629
5279015 - 5415308
136294
ENSAPLT00000008177
5279015 - 5415308
136294