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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5399954_5400574_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
5399954 - 5400574
Intron Length:
621

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATTCTT
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTAAGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
GTGTTTTTAAGT
Flanking Amino Acid:
YTCTPVVEAQRGLHLDFPHS
Intron Amino Acid Position:
269

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
79.8
35.1
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
73
0.52
1
71.4
38.5
Minor 5ss
34.8
-1.7
3.1
50.1
46.1
Minor BPS
62.9
0.48
1.6
75.57
41.7

Associated Gene:

Gene:
FAM189A1
Ensembl Gene ID:
ENSAPLG00000007880
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008177
5279015 - 5415308
136294
ENSAPLT00000037065
5279015 - 5415308
136294
ENSAPLT00000025629
5279015 - 5415308
136294