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Intron Name: Anas_platyrhynchos_platyrhynchos_11_5404493_5407568_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5404493 - 5407568

Intron Length:

3076

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATTGAT

5'SS Class:

strong_major

3'SS Sequence:

TCTTGTTTTGCAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

GCAAGAA

U12 Branch Point Sequence:

TCTTCCTTTTTC

Flanking Amino Acid:

RNMTPGFSTQVSGESTSLMV

Intron Amino Acid Position:

340

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.7

0.77

0.9

79.4

28.6

Major BPS

41.3

-0.5

1.1

32.1

Major PPT

88.8

0.87

0.7

83.9

Minor 5ss

-2.4

3.2

40.2

45.9

Minor BPS

44.8

-0.4

3.6

70.08

Associated Gene:

Gene:

FAM189A1

Ensembl Gene ID:

ENSAPLG00000007880

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025629

5279015 - 5415308

136294

ENSAPLT00000008177

5279015 - 5415308

136294