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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5411827_5412726_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
5411827 - 5412726
Intron Length:
900

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CCCCTTCTTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTACTTTAAAG
Flanking Amino Acid:
AGLSPATLETVPVSDSHMAA
Intron Amino Acid Position:
564

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
78
0.63
0.7
76.2
26
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
69.7
0.48
1.5
73.52
38.7

Associated Gene:

Gene:
FAM189A1
Ensembl Gene ID:
ENSAPLG00000007880
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037065
5279015 - 5415308
136294
ENSAPLT00000025629
5279015 - 5415308
136294
ENSAPLT00000008177
5279015 - 5415308
136294