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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5418184_5419543_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5418184 - 5419543
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
AATCAATCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
ATTCTGTTAATT
Flanking Amino Acid:
VQALSNSVGEIHMKTMPAAM
Intron Amino Acid Position:
733

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
84
28.8
Major BPS
84.4
0.85
1
84
34.5
Major PPT
60
0.23
1
52.5
40.7
Minor 5ss
31.6
-2.1
3.1
39
46.4
Minor BPS
58.9
0.36
2
79.24
37.1

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007880
5418112 - 5459617
41506