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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5419685_5426128_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5419685 - 5426128
Intron Length:
6444

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTAAGTTTC
5'SS Class:
major
3'SS Sequence:
TTTCTCTTGGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
CATTTCTAAACT
Flanking Amino Acid:
QLGFSVQNGIICSLMRGGIA
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
77
32.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
82.8
0.74
0.9
80.7
31.3
Minor 5ss
47.3
-0.3
2.8
67.6
37.4
Minor BPS
66.9
0.61
1.7
80.35
41.7

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023098
5419195 - 5466842
47648
ENSAPLT00000007880
5418112 - 5459617
41506
ENSAPLT00000045909
5419195 - 5466842
47648
ENSAPLT00000045889
5419195 - 5459617
40423