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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5426249_5427212_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5426249 - 5427212
Intron Length:
964

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCCCAA
5'SS Class:
major
3'SS Sequence:
GGATATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATGAT
U12 Branch Point Sequence:
TCTTCCAGAAAT
Flanking Amino Acid:
PLATCQGIIKGLKNQTQVKL
Intron Amino Acid Position:
646

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.1
0.36
1.3
56.2
44.7
Major BPS
84.6
0.86
1
74
41.2
Major PPT
72.8
0.51
1
64.9
45.2
Minor 5ss
41.7
-0.9
3.2
56.2
48
Minor BPS
57.8
0.32
1.9
79.58
41.7

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000007880
5418112 - 5459617
41506
ENSAPLT00000045909
5419195 - 5466842
47648
ENSAPLT00000023098
5419195 - 5466842
47648
ENSAPLT00000019960
5423488 - 5459617
36130