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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5432415_5439497_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
5432415 - 5439497
Intron Length:
7083

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
TTGCTTTATGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
ACGTCCTTATTT
Flanking Amino Acid:
RIKVLNADTQETMMDHALRT
Intron Amino Acid Position:
453

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
98
1.13
0.6
93.1
14.6
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
77.1
0.61
0.9
73.9
35.8
Minor 5ss
41.9
-0.9
2.9
57.8
46.8
Minor BPS
64
0.52
1.6
73.86
43.6

Associated Gene:

Gene:
APBA2
Ensembl Gene ID:
ENSAPLG00000007575
Chromosome:
11

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023098
5419195 - 5466842
47648
ENSAPLT00000019960
5423488 - 5459617
36130
ENSAPLT00000007880
5418112 - 5459617
41506
ENSAPLT00000045909
5419195 - 5466842
47648
ENSAPLT00000045889
5419195 - 5459617
40423