Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_11_5439585_5442135_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

5439585 - 5442135

Intron Length:

2551

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGGGAT

5'SS Class:

strong_major

3'SS Sequence:

ATGTACCTTCTAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AATTAAA

U12 Branch Point Sequence:

GCCCTCATAACA

Flanking Amino Acid:

QAQEAVSRVKTSEGDSQALT

Intron Amino Acid Position:

412

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

38.2

Major BPS

73.8

0.59

0.9

26.8

Major PPT

69.4

0.44

0.9

59.7

41.9

Minor 5ss

29.5

-2.3

3.8

45.4

49.7

Minor BPS

50.3

1.6

58.02

41.3

Associated Gene:

Gene:

APBA2

Ensembl Gene ID:

ENSAPLG00000007575

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023098

5419195 - 5466842

47648